Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

ABB28_RS02115 ABB28_02125 WP_057507033.1: bifunctional aspartate kinase/diaminopimelate decarboxylase
is similar to:
PaperBLAST

SPE1 / GB|AAC49877.1: ornithine decarboxylase (ODC); EC 4.1.1.17 from Candida albicans

28% id,
49% cov

speA ABB28_RS10025 ABB28_10055 WP_057508489.1: arginine decarboxylase
is similar to:
PaperBLAST

A0A1E1IR91: ornithine decarboxylase (EC 4.1.1.17) from Leishmania guyanensis

25% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory