Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 56 curated entries in PaperBLAST's database that match '4.1.1.19' as complete word(s).

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

speA ABB28_RS10025 ABB28_10055 WP_057508489.1: arginine decarboxylase is similar to:	PaperBLAST
speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa	49% id, 98% cov
Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri	47% id, 98% cov
Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens	47% id, 98% cov
SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli speA / P21170: biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli	47% id, 96% cov
Q7MK24: arginine decarboxylase (EC 4.1.1.19) from Vibrio vulnificus	46% id, 98% cov
Q8ZHG8: arginine decarboxylase (EC 4.1.1.19) from Yersinia pestis	47% id, 96% cov
A0A076IP90: arginine decarboxylase (EC 4.1.1.19) from Phocaeicola dorei	42% id, 100% cov
ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum	41% id, 98% cov
Q8YRP3: arginine decarboxylase (EC 4.1.1.19) from Nostoc sp.	41% id, 92% cov
P72587: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	38% id, 97% cov
P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	40% id, 93% cov
ADC2_ORYSJ / Q7XRA1: Arginine decarboxylase 2; ARGDC2; OsADC2; EC 4.1.1.19 from Oryza sativa	35% id, 98% cov
Q39827: arginine decarboxylase (EC 4.1.1.19) from Glycine max	37% id, 91% cov
MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	36% id, 92% cov
SPE1_ARATH / Q9SI64: Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana Q9SI64: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	39% id, 82% cov
O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori	32% id, 98% cov
SPE1_ORYSJ / Q9SNN0: Arginine decarboxylase 1; ARGDC1; OsADC1; EC 4.1.1.19 from Oryza sativa Q9SNN0: arginine decarboxylase (EC 4.1.1.19) from Oryza sativa	38% id, 82% cov
Q71S28: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	39% id, 81% cov
ADC1A_TOBAC / A0A1S3YCW2: Arginine decarboxylase 1A, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	40% id, 78% cov
ADC / Q43075: arginine decarboxylase (EC 4.1.1.19) from Pisum sativum	39% id, 79% cov
ADC1B_TOBAC / A0A1S3WYR7: Arginine decarboxylase 1B, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	40% id, 78% cov
SPE2_ARATH / O23141: Arginine decarboxylase 2; ADC 2; ARGDC 2; AtADC2; ADC-N; EC 4.1.1.19 from Arabidopsis thaliana O23141: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	38% id, 81% cov
Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni	34% id, 92% cov
Q5R1Y5: arginine decarboxylase (EC 4.1.1.19) from Malus domestica	37% id, 84% cov
MADC3 / Q9M617: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	36% id, 83% cov
B3Y023: arginine decarboxylase (EC 4.1.1.19) from Prunus persica	37% id, 81% cov
F6KDF0: arginine decarboxylase (EC 4.1.1.19) from Citrus trifoliata	38% id, 78% cov
SPE1 / P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa	38% id, 67% cov
Q9LDM9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	43% id, 49% cov
Q9M7K9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	43% id, 49% cov
SPE1 / P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa	29% id, 40% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

8589-10718 (frame -2) on NZ_LDJK01000043.1 Stenotrophomonas chelatiphaga strain DSM 21508 contig_43, whole genome shotgun sequence is similar to:	PaperBLAST
speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa Also see hits to annotated proteins above	49% id, 99% cov
Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri Also see hits to annotated proteins above	47% id, 100% cov
Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens Also see hits to annotated proteins above	47% id, 99% cov
SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli speA / P21170: biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli Also see hits to annotated proteins above	47% id, 99% cov
Q8YRP3: arginine decarboxylase (EC 4.1.1.19) from Nostoc sp. Also see hits to annotated proteins above	40% id, 97% cov
Q39827: arginine decarboxylase (EC 4.1.1.19) from Glycine max Also see hits to annotated proteins above	36% id, 96% cov
MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea Also see hits to annotated proteins above	37% id, 94% cov
SPE1_ARATH / Q9SI64: Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana Q9SI64: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana Also see hits to annotated proteins above	39% id, 84% cov
Q71S28: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum Also see hits to annotated proteins above	38% id, 83% cov
SPE1_ORYSJ / Q9SNN0: Arginine decarboxylase 1; ARGDC1; OsADC1; EC 4.1.1.19 from Oryza sativa Q9SNN0: arginine decarboxylase (EC 4.1.1.19) from Oryza sativa Also see hits to annotated proteins above	37% id, 85% cov
SPE2_ARATH / O23141: Arginine decarboxylase 2; ADC 2; ARGDC 2; AtADC2; ADC-N; EC 4.1.1.19 from Arabidopsis thaliana O23141: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana Also see hits to annotated proteins above	38% id, 83% cov
ADC1A_TOBAC / A0A1S3YCW2: Arginine decarboxylase 1A, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum Also see hits to annotated proteins above	39% id, 81% cov
Q5R1Y5: arginine decarboxylase (EC 4.1.1.19) from Malus domestica Also see hits to annotated proteins above	37% id, 86% cov
B3Y023: arginine decarboxylase (EC 4.1.1.19) from Prunus persica Also see hits to annotated proteins above	37% id, 83% cov
MADC3 / Q9M617: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea Also see hits to annotated proteins above	36% id, 86% cov
F6KDF0: arginine decarboxylase (EC 4.1.1.19) from Citrus trifoliata Also see hits to annotated proteins above	37% id, 84% cov
Q9LDM9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum Also see hits to annotated proteins above	42% id, 52% cov
Q9M7K9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum Also see hits to annotated proteins above	42% id, 52% cov
More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory