Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 15 curated entries in PaperBLAST's database that match '4.1.2.14' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

eda ABB28_RS12920 ABB28_12960 WP_057509004.1: bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
is similar to:
PaperBLAST

Q00384: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Zymomonas mobilis

51% id,
96% cov

Q0K1X1: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Cupriavidus necator

53% id,
93% cov

ALKH_ECOLI / P0A955: KHG/KDPG aldolase; EC 4.1.3.16; EC 4.1.2.14 from Escherichia coli
Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli
eda / RF|NP_416364: KHG/KDPG aldolase; EC 4.1.2.14; EC 4.1.3.16 from Escherichia coli

51% id,
94% cov

More...

eda ABB28_RS08125 ABB28_08155 WP_057508153.1: bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
is similar to:
PaperBLAST

Q0K1X1: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Cupriavidus necator

46% id,
94% cov

ALKH_ECOLI / P0A955: KHG/KDPG aldolase; EC 4.1.3.16; EC 4.1.2.14 from Escherichia coli
Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli
eda / RF|NP_416364: KHG/KDPG aldolase; EC 4.1.2.14; EC 4.1.3.16 from Escherichia coli

37% id,
99% cov

Q00384: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Zymomonas mobilis

39% id,
87% cov

More...

ABB28_RS13180 ABB28_13220 WP_057509056.1: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase
is similar to:
PaperBLAST

Q0K1X1: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Cupriavidus necator

34% id,
84% cov

D4GV57: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Haloferax volcanii

34% id,
78% cov

Q00384: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Zymomonas mobilis

27% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory