Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

thrC ABB28_RS00505 ABB28_00510 WP_057506743.1: threonine synthase
is similar to:
PaperBLAST

N515DRAFT_0575: threonine synthase (EC 4.2.3.1) from Dyella japonica

63% id,
98% cov

THRC_ECOLI / P00934: Threonine synthase; TS; EC 4.2.3.1 from Escherichia coli
ThrC / b0004: threonine synthase (EC 4.2.3.1) from Escherichia coli
thrC / GB|BAB96581.1: threonine synthase; EC 4.2.3.1 from Escherichia coli
thrC / P00934: threonine synthase (EC 4.2.3.1) from Escherichia coli
P00934: threonine synthase (EC 4.2.3.1) from Escherichia coli

39% id,
99% cov

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

38% id,
95% cov

More...

ABB28_RS14485 ABB28_14525 WP_057509300.1: threonine dehydratase
is similar to:
PaperBLAST

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

27% id,
82% cov

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

26% id,
83% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

27% id,
69% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5386-6570 (frame +1) on NZ_LDJK01000073.1 Stenotrophomonas chelatiphaga strain DSM 21508 contig_73, whole genome shotgun sequence
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

26% id,
83% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory