Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 23 curated entries in PaperBLAST's database that match '4.3.1.3' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

hutH ABB28_RS00620 ABB28_00625 WP_057506766.1: histidine ammonia-lyase
is similar to:
PaperBLAST

Ga0059261_3963: Histidine ammonia-lyase (EC 4.3.1.3) from Sphingomonas koreensis

74% id,
100% cov

SM_b21165: Histidine ammonia-lyase (EC 4.3.1.3) from Sinorhizobium meliloti

61% id,
100% cov

BPHYT_RS07555: Histidine ammonia-lyase (EC 4.3.1.3) from Burkholderia phytofirmans

60% id,
98% cov

More...

ABB28_RS02670 ABB28_02685 WP_057507134.1: aromatic amino acid ammonia-lyase
is similar to:
PaperBLAST

Ac3H11_2558: Histidine ammonia-lyase (EC 4.3.1.3) from Acidovorax sp.

35% id,
95% cov

Ga0059261_3963: Histidine ammonia-lyase (EC 4.3.1.3) from Sphingomonas koreensis

35% id,
94% cov

BPHYT_RS07555: Histidine ammonia-lyase (EC 4.3.1.3) from Burkholderia phytofirmans

35% id,
92% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory