Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 19 curated entries in PaperBLAST's database that match '4.3.2.1' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

argH ABB28_RS15360 ABB28_15400 WP_057687279.1: argininosuccinate lyase
is similar to:
PaperBLAST

N515DRAFT_3770: arginosuccinate lyase (EC 4.3.2.1) from Dyella japonica

74% id,
99% cov

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

38% id,
93% cov

CA265_RS18485: arginosuccinate lyase (EC 4.3.2.1) from Pedobacter sp.

36% id,
95% cov

More...

ABB28_RS17120 ABB28_17165 WP_057687566.1: class II fumarate hydratase
is similar to:
PaperBLAST

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

23% id,
74% cov

ABB28_RS09870 ABB28_09900 WP_057508463.1: 3-carboxy-cis,cis-muconate cycloisomerase
is similar to:
PaperBLAST

CA265_RS18485: arginosuccinate lyase (EC 4.3.2.1) from Pedobacter sp.

25% id,
52% cov

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

26% id,
43% cov

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

25% id,
44% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory