Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 6 curated entries in PaperBLAST's database that match '5.1.1.5' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

alr ABB28_RS06670 ABB28_06705 WP_057507895.1: alanine racemase
is similar to:
PaperBLAST

LYSR_OENOB / Q04HB7: Lysine racemase; EC 5.1.1.5 from Oenococcus oeni
Q04HB7: lysine racemase (EC 5.1.1.5) from Oenococcus oeni

29% id,
98% cov

LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis
M4GGR9: lysine racemase (EC 5.1.1.5) from Proteus mirabilis

25% id,
81% cov

ABB28_RS15230 ABB28_15270 WP_057687228.1: aspartate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium

32% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

7186-8220 (frame -3) on NZ_LDJK01000081.1 Stenotrophomonas chelatiphaga strain DSM 21508 contig_81, whole genome shotgun sequence
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium
Also see hits to annotated proteins above

30% id,
30% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory