Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 17 curated entries in PaperBLAST's database that match '5.3.1.7' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

ABB28_RS12325 ABB28_12360 WP_057508916.1: AGE family epimerase/isomerase
is similar to:
PaperBLAST

MANI_MARM1 / F2JVT6: D-mannose isomerase; MI; EC 5.3.1.7 from Marinomonas mediterranea

57% id,
99% cov

BPHYT_RS02050: D-mannose isomerase (EC 5.3.1.7) from Burkholderia phytofirmans

61% id,
91% cov

Ac3H11_2078: D-mannose isomerase (EC 5.3.1.7) from Acidovorax sp.

59% id,
94% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

15270-16493 (frame +3) on NZ_LDJK01000056.1 Stenotrophomonas chelatiphaga strain DSM 21508 contig_56, whole genome shotgun sequence
is similar to:
PaperBLAST

BPHYT_RS02050: D-mannose isomerase (EC 5.3.1.7) from Burkholderia phytofirmans
Also see hits to annotated proteins above

61% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory