Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 9 curated entries in PaperBLAST's database that match '6.3.2.43' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

lysS ABB28_RS16860 ABB28_16905 WP_057687524.1: lysine--tRNA ligase
is similar to:
PaperBLAST

A5U2Z7: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis
P9WFU7: lysyltransferase (EC 2.3.2.3); [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis

40% id,
42% cov

carB ABB28_RS13565 ABB28_13605 WP_057509125.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

LYSX_THET8 / Q5SH23: Alpha-aminoadipate--LysW ligase LysX; AAA--LysW ligase LysX; EC 6.3.2.43 from Thermus thermophilus
lysX / Q5SH23: L-2-aminoadipate--LysW ligase monomer (EC 6.3.2.43) from Thermus thermophilus
Q5SH23: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Thermus thermophilus

31% id,
36% cov

epmA ABB28_RS10570 ABB28_10605 WP_057508597.1: EF-P lysine aminoacylase EpmA
is similar to:
PaperBLAST

A5U2Z7: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis
P9WFU7: lysyltransferase (EC 2.3.2.3); [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis

31% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

403-2019 (frame +1) on NZ_LDJK01000103.1 Stenotrophomonas chelatiphaga strain DSM 21508 contig_103, whole genome shotgun sequence
is similar to:
PaperBLAST

A5U2Z7: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis
P9WFU7: lysyltransferase (EC 2.3.2.3); [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

39% id,
45% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory