Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 39 curated entries in PaperBLAST's database that match '6.3.5.4' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

asnB ABB28_RS06540 ABB28_06575 WP_057507873.1: asparagine synthase B
is similar to:
PaperBLAST

ASNB_ECOLI / P22106: Asparagine synthetase B [glutamine-hydrolyzing]; AS-B; EC 6.3.5.4 from Escherichia coli
AsnB / b0674: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38; EC 3.5.1.2) from Escherichia coli
asnB: asparagine synthetase B, glutamine-hydrolyzing; EC 6.3.5.4 from Escherichia coli
asnB / P22106: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38) from Escherichia coli

60% id,
100% cov

Q9SP19: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Helianthus annuus

57% id,
99% cov

B3KYI2: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Phaseolus vulgaris

57% id,
97% cov

More...

glmS ABB28_RS07710 ABB28_07740 WP_057508080.1: glutamine--fructose-6-phosphate transaminase (isomerizing)
is similar to:
PaperBLAST

Q9SP20: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Helianthus annuus

31% id,
16% cov

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

22% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory