Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

ABB28_RS08240 ABB28_08270 WP_057508172.1: MFS transporter
is similar to:
PaperBLAST

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

26% id,
93% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

23% id,
94% cov

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

23% id,
85% cov

mdtD ABB28_RS11265 ABB28_11305 WP_152983460.1: multidrug transporter subunit MdtD
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

21% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory