Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 3 curated entries in PaperBLAST's database that match 'homoaconitase small subunit' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

leuD ABB28_RS14505 ABB28_14545 WP_057509304.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

HACB_THET2 / Q9ZND9: Homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysU / Q9ZND9: homoaconitase small subunit (EC 4.2.1.36) from Thermus thermophilus

32% id,
93% cov

HACB_METJA / Q58667: Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

30% id,
66% cov

acnA ABB28_RS16850 ABB28_16895 WP_057687523.1: aconitate hydratase AcnA
is similar to:
PaperBLAST

HACB_METJA / Q58667: Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

30% id,
62% cov

HACB_THET2 / Q9ZND9: Homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysU / Q9ZND9: homoaconitase small subunit (EC 4.2.1.36) from Thermus thermophilus

41% id,
40% cov

acnD ABB28_RS11325 ABB28_11365 WP_057508738.1: Fe/S-dependent 2-methylisocitrate dehydratase AcnD
is similar to:
PaperBLAST

HACB_THET2 / Q9ZND9: Homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysU / Q9ZND9: homoaconitase small subunit (EC 4.2.1.36) from Thermus thermophilus

36% id,
48% cov

HACB_METJA / Q58667: Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

25% id,
59% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory