Curated BLAST for Genomes

 

Curated BLAST

Searching in Kocuria flava HO-9041 (GCF_001482365.1)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.43' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Kocuria flava HO-9041, or try another query

serA AS188_RS05455 AS188_05455 WP_058858001.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

PS417_12555: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas simiae

31% id,
95% cov

kguD / Q5TM04: 2-dehydro-6-phosphogluconate reductase (EC 1.1.1.43) from Pseudomonas fluorescens

31% id,
96% cov

AO353_26885: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas fluorescens

31% id,
94% cov

AS188_RS01320 AS188_01320 WP_058857324.1: D-2-hydroxyacid dehydrogenase
is similar to:
PaperBLAST

PS417_12555: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas simiae

33% id,
91% cov

AO353_26885: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas fluorescens

30% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1208594-1209994 (frame -2) on NZ_CP013254.1 Kocuria flava strain HO-9041 chromosome, complete genome
is similar to:
PaperBLAST

PS417_12555: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas simiae
Also see hits to annotated proteins above

31% id,
97% cov

AO353_26885: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas fluorescens
Also see hits to annotated proteins above

31% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory