Curated BLAST for Genomes

 

Curated BLAST

Searching in Kocuria flava HO-9041 (GCF_001482365.1)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.59' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Kocuria flava HO-9041, or try another query

AS188_RS03705 AS188_03705 WP_058857711.1: GMC family oxidoreductase N-terminal domain-containing protein
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

38% id,
53% cov

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

36% id,
32% cov

mmsB AS188_RS02215 AS188_02215 WP_058857470.1: 3-hydroxyisobutyrate dehydrogenase
is similar to:
PaperBLAST

HPD1 / A0A1D8PQ07: 3-hydroxypropanonate dehydrogenase (EC 1.1.1.59) from Candida albicans
A0A1D8PQ07: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Candida albicans

34% id,
58% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

800215-803562 (frame +1) on NZ_CP013254.1 Kocuria flava strain HO-9041 chromosome, complete genome
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.
Also see hits to annotated proteins above

37% id,
58% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory