Curated BLAST for Genomes

 

Curated BLAST

Searching in Kocuria flava HO-9041 (GCF_001482365.1)

Found 26 curated entries in PaperBLAST's database that match '1.13.11.27' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Kocuria flava HO-9041, or try another query

AS188_RS01880 AS188_01880 WP_058857420.1: sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein
is similar to:
PaperBLAST

HPPD1_ASPFU / Q4WHU1: 4-hydroxyphenylpyruvate dioxygenase; 4HPPD; HPD; HPPDase; L-tyrosine degradation gene cluster protein hppD; Pyomelanin biosynthesis cluster protein hppD; EC 1.13.11.27 from Aspergillus fumigatus

26% id,
67% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory