Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudarthrobacter sulfonivorans Ar51 (GCF_001484605.1)

Found 6 curated entries in PaperBLAST's database that match '5.1.1.5' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudarthrobacter sulfonivorans Ar51, or try another query

alr AU252_RS17270 AU252_17270 WP_058931773.1: alanine racemase
is similar to:
PaperBLAST

LYSR_OENOB / Q04HB7: Lysine racemase; EC 5.1.1.5 from Oenococcus oeni
Q04HB7: lysine racemase (EC 5.1.1.5) from Oenococcus oeni

28% id,
99% cov

LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis
M4GGR9: lysine racemase (EC 5.1.1.5) from Proteus mirabilis

32% id,
82% cov

alr AU252_RS04555 AU252_04555 WP_058929698.1: alanine racemase
is similar to:
PaperBLAST

LYSR_OENOB / Q04HB7: Lysine racemase; EC 5.1.1.5 from Oenococcus oeni
Q04HB7: lysine racemase (EC 5.1.1.5) from Oenococcus oeni

28% id,
89% cov

LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis
M4GGR9: lysine racemase (EC 5.1.1.5) from Proteus mirabilis

26% id,
85% cov

argC AU252_RS02905 AU252_02905 WP_058932706.1: N-acetyl-gamma-glutamyl-phosphate reductase
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium

42% id,
52% cov

AU252_RS00205 AU252_00205 WP_240484269.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium

34% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory