Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudarthrobacter sulfonivorans Ar51 (GCF_001484605.1)

Found 13 curated entries in PaperBLAST's database that match '5.1.1.7' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudarthrobacter sulfonivorans Ar51, or try another query

dapF AU252_RS03075 AU252_03075 WP_058929468.1: diaminopimelate epimerase
is similar to:
PaperBLAST

E4NI20: diaminopimelate epimerase (EC 5.1.1.7) from Kitasatospora setae

45% id,
97% cov

DAPF_CORGL / Q8NP73: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Corynebacterium glutamicum
Q8NP73: diaminopimelate epimerase (EC 5.1.1.7) from Corynebacterium glutamicum

40% id,
98% cov

DAPF_MYCTU / P9WP19: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Mycobacterium tuberculosis
P9WP19: diaminopimelate epimerase (EC 5.1.1.7) from Mycobacterium tuberculosis

40% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory