Curated BLAST for Genomes

 

Curated BLAST

Searching in Novosphingobium fuchskuhlense FNE08-7 (GCF_001519075.1)

Found 20 curated entries in PaperBLAST's database that match '1.2.1.16' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 15 relevant proteins in Novosphingobium fuchskuhlense FNE08-7, or try another query

AQZ52_RS13580 AQZ52_13590 WP_276203276.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

SO1275: succinate-semialdehyde dehydrogenase (NADP+) [EC: 1.2.1.16] from Shewanella oneidensis

61% id,
94% cov

gabD1 / Q0K2K1: NAD(P)+-dependent succinate semialdehyde dehydrogenase monomer (EC 1.2.1.16) from Cupriavidus necator
Q0K2K1: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Cupriavidus necator

61% id,
95% cov

A0A0F4THK8: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Pseudomonas fluorescens

60% id,
95% cov

More...

AQZ52_RS07445 AQZ52_07455 WP_205626420.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

42% id,
99% cov

gabD1 / Q0K2K1: NAD(P)+-dependent succinate semialdehyde dehydrogenase monomer (EC 1.2.1.16) from Cupriavidus necator
Q0K2K1: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Cupriavidus necator

41% id,
98% cov

SSDH_PAENI / Q8GAI8: Succinate-semialdehyde dehydrogenase; SsaDH; EC 1.2.1.16 from Paenarthrobacter nicotinovorans

41% id,
98% cov

More...

betB AQZ52_RS13160 AQZ52_13170 WP_067911518.1: betaine-aldehyde dehydrogenase
is similar to:
PaperBLAST

gabD1 / Q0K2K1: NAD(P)+-dependent succinate semialdehyde dehydrogenase monomer (EC 1.2.1.16) from Cupriavidus necator
Q0K2K1: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Cupriavidus necator

42% id,
93% cov

Q9RBF6: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16); succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) from Cupriavidus necator

41% id,
93% cov

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

37% id,
100% cov

More...

AQZ52_RS07360 AQZ52_07370 WP_067907935.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

40% id,
96% cov

A0A0F4THK8: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Pseudomonas fluorescens

38% id,
98% cov

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

38% id,
99% cov

More...

AQZ52_RS15205 AQZ52_15220 WP_067912849.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

37% id,
98% cov

SO1275: succinate-semialdehyde dehydrogenase (NADP+) [EC: 1.2.1.16] from Shewanella oneidensis

35% id,
97% cov

Q8ZPI3: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Salmonella enterica

35% id,
97% cov

More...

AQZ52_RS11395 AQZ52_11405 WP_067910653.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

37% id,
98% cov

SSDH_PAENI / Q8GAI8: Succinate-semialdehyde dehydrogenase; SsaDH; EC 1.2.1.16 from Paenarthrobacter nicotinovorans

37% id,
98% cov

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

36% id,
98% cov

More...

AQZ52_RS13615 AQZ52_13625 WP_067911749.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

A0A0F4THK8: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Pseudomonas fluorescens

37% id,
96% cov

gabD / Q4KKA2: NAD(P)-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

37% id,
96% cov

AO353_11505: succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

37% id,
96% cov

More...

adh AQZ52_RS14300 AQZ52_14315 WP_067912398.1: aldehyde dehydrogenase
is similar to:
PaperBLAST

gabD1 / Q0K2K1: NAD(P)+-dependent succinate semialdehyde dehydrogenase monomer (EC 1.2.1.16) from Cupriavidus necator
Q0K2K1: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Cupriavidus necator

36% id,
99% cov

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

35% id,
98% cov

Q9RBF6: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16); succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) from Cupriavidus necator

35% id,
99% cov

More...

AQZ52_RS16635 AQZ52_16650 WP_067913546.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

Q976X5: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16); aldehyde dehydrogenase [NAD(P)+] (EC 1.2.1.5) from Sulfurisphaera tokodaii

37% id,
95% cov

A0A0F4THK8: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Pseudomonas fluorescens

36% id,
94% cov

AO353_11505: succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

36% id,
94% cov

More...

AQZ52_RS07290 AQZ52_07300 WP_067907901.1: aldehyde dehydrogenase
is similar to:
PaperBLAST

SO1275: succinate-semialdehyde dehydrogenase (NADP+) [EC: 1.2.1.16] from Shewanella oneidensis

34% id,
98% cov

AO353_11505: succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

34% id,
98% cov

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

34% id,
98% cov

More...

astD AQZ52_RS07960 AQZ52_07970 WP_067908196.1: succinylglutamate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

34% id,
92% cov

gabD1 / Q0K2K1: NAD(P)+-dependent succinate semialdehyde dehydrogenase monomer (EC 1.2.1.16) from Cupriavidus necator
Q0K2K1: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Cupriavidus necator

34% id,
91% cov

SSDH_PAENI / Q8GAI8: Succinate-semialdehyde dehydrogenase; SsaDH; EC 1.2.1.16 from Paenarthrobacter nicotinovorans

31% id,
97% cov

More...

putA AQZ52_RS14875 AQZ52_14890 WP_067912680.1: bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA
is similar to:
PaperBLAST

SSDH_PAENI / Q8GAI8: Succinate-semialdehyde dehydrogenase; SsaDH; EC 1.2.1.16 from Paenarthrobacter nicotinovorans

32% id,
96% cov

gabD / Q4KKA2: NAD(P)-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

33% id,
92% cov

gabD1 / Q0K2K1: NAD(P)+-dependent succinate semialdehyde dehydrogenase monomer (EC 1.2.1.16) from Cupriavidus necator
Q0K2K1: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Cupriavidus necator

33% id,
92% cov

More...

AQZ52_RS06890 AQZ52_06900 WP_067907684.1: succinylglutamate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

gabD1 / Q0K2K1: NAD(P)+-dependent succinate semialdehyde dehydrogenase monomer (EC 1.2.1.16) from Cupriavidus necator
Q0K2K1: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Cupriavidus necator

31% id,
93% cov

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

31% id,
92% cov

Q9RBF6: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16); succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) from Cupriavidus necator

30% id,
93% cov

More...

AQZ52_RS00540 AQZ52_00540 WP_067906022.1: CoA-acylating methylmalonate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

SSDH_PAENI / Q8GAI8: Succinate-semialdehyde dehydrogenase; SsaDH; EC 1.2.1.16 from Paenarthrobacter nicotinovorans

29% id,
98% cov

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

28% id,
98% cov

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

29% id,
93% cov

More...

AQZ52_RS09020 AQZ52_09025 WP_067908690.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

B1WSJ7: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Crocosphaera subtropica

28% id,
98% cov

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

29% id,
93% cov

gabD1 / Q0K2K1: NAD(P)+-dependent succinate semialdehyde dehydrogenase monomer (EC 1.2.1.16) from Cupriavidus necator
Q0K2K1: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Cupriavidus necator

29% id,
86% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

117101-118978 (frame -3) on NZ_KQ954244.1 Novosphingobium fuchskuhlense strain FNE08-7 PRJNA299317_s001, whole genome shotgun sequence
is similar to:
PaperBLAST

gabD / Q4KKA2: NAD(P)-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens
Also see hits to annotated proteins above

29% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory