Curated BLAST for Genomes

 

Curated BLAST

Searching in Hyphomicrobium sulfonivorans WDL6 (GCF_001541235.1)

Found 22 curated entries in PaperBLAST's database that match '1.3.8.5' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Hyphomicrobium sulfonivorans WDL6, or try another query

APY04_RS09545 APY04_1984 WP_068462021.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

36% id,
99% cov

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

36% id,
99% cov

SO1679: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Shewanella oneidensis

35% id,
98% cov

More...

APY04_RS04105 APY04_0853 WP_068459994.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

PS417_13840: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

32% id,
97% cov

PP_3492: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas putida

31% id,
97% cov

AO353_25670: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

30% id,
99% cov

More...

APY04_RS00570 APY04_0118 WP_083509374.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Psest_2445: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

30% id,
93% cov

PS417_13850: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

28% id,
99% cov

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

27% id,
99% cov

More...

APY04_RS04790 APY04_0995 WP_068460239.1: isovaleryl-CoA dehydrogenase
is similar to:
PaperBLAST

PP_3492: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas putida

24% id,
96% cov

PS417_13850: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

26% id,
75% cov

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

26% id,
75% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory