Curated BLAST for Genomes

 

Curated BLAST

Searching in Hyphomicrobium sulfonivorans WDL6 (GCF_001541235.1)

Found 7 curated entries in PaperBLAST's database that match '2.6.1.78' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Hyphomicrobium sulfonivorans WDL6, or try another query

APY04_RS08820 APY04_1831 WP_068461763.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

Q02635: aspartate transaminase (EC 2.6.1.1); aspartate-prephenate aminotransferase (EC 2.6.1.78); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Sinorhizobium meliloti

68% id,
100% cov

AAPAT_CHLTE / Q8KDS8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.78 from Chlorobaculum tepidum

47% id,
97% cov

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus
Q56232: aspartate-prephenate aminotransferase (EC 2.6.1.78) from Thermus thermophilus

44% id,
100% cov

More...

APY04_RS05760 APY04_1188 WP_083509522.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus
Q56232: aspartate-prephenate aminotransferase (EC 2.6.1.78) from Thermus thermophilus

35% id,
95% cov

Q02635: aspartate transaminase (EC 2.6.1.1); aspartate-prephenate aminotransferase (EC 2.6.1.78); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Sinorhizobium meliloti

29% id,
98% cov

AAPAT_CHLTE / Q8KDS8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.78 from Chlorobaculum tepidum

30% id,
94% cov

More...

APY04_RS08645 APY04_1795 WP_068461734.1: LL-diaminopimelate aminotransferase
is similar to:
PaperBLAST

Q02635: aspartate transaminase (EC 2.6.1.1); aspartate-prephenate aminotransferase (EC 2.6.1.78); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Sinorhizobium meliloti

28% id,
98% cov

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus
Q56232: aspartate-prephenate aminotransferase (EC 2.6.1.78) from Thermus thermophilus

28% id,
98% cov

AAPAT_CHLTE / Q8KDS8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.78 from Chlorobaculum tepidum

27% id,
94% cov

More...

cobD APY04_RS14340 APY04_2994 WP_068463931.1: threonine-phosphate decarboxylase CobD
is similar to:
PaperBLAST

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus
Q56232: aspartate-prephenate aminotransferase (EC 2.6.1.78) from Thermus thermophilus

26% id,
76% cov

rffA APY04_RS03165 APY04_0664 WP_068459621.1: dTDP-4-amino-4,6-dideoxygalactose transaminase
is similar to:
PaperBLAST

Q02635: aspartate transaminase (EC 2.6.1.1); aspartate-prephenate aminotransferase (EC 2.6.1.78); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Sinorhizobium meliloti

37% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory