Curated BLAST for Genomes

 

Curated BLAST

Searching in Hyphomicrobium sulfonivorans WDL6 (GCF_001541235.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Hyphomicrobium sulfonivorans WDL6, or try another query

APY04_RS16140 APY04_3377 WP_068464906.1: homoserine kinase
is similar to:
PaperBLAST

Ga0059261_3253: homoserine kinase (EC 2.7.1.39) from Sphingomonas koreensis

49% id,
97% cov

KHSE_PSEAE / P29364: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Pseudomonas aeruginosa

39% id,
100% cov

APY04_RS11545 APY04_2411 WP_068463045.1: shikimate kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

29% id,
78% cov

APY04_RS06420 APY04_1331 WP_068460852.1: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
is similar to:
PaperBLAST

N515DRAFT_0576: homoserine kinase (EC 2.7.1.39) from Dyella japonica

26% id,
82% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory