Curated BLAST for Genomes

 

Curated BLAST

Searching in Hyphomicrobium sulfonivorans WDL6 (GCF_001541235.1)

Found 1 curated entries in PaperBLAST's database that match 'acetohydroxyacid synthase subunit B' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Hyphomicrobium sulfonivorans WDL6, or try another query

APY04_RS10540 APY04_2196 WP_068462402.1: acetolactate synthase 3 large subunit
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

57% id,
97% cov

APY04_RS11000 APY04_2295 WP_068462547.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

28% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

157563-159305 (frame +3) on NZ_LMTR01000071.1 Hyphomicrobium sulfonivorans strain WDL6 contig_5, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator
Also see hits to annotated proteins above

28% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory