Curated BLAST for Genomes

 

Curated BLAST

Searching in Steroidobacter denitrificans DSM 18526 (GCF_001579945.1)

Found 12 curated entries in PaperBLAST's database that match '1.1.1.282' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 0 relevant proteins in Steroidobacter denitrificans DSM 18526, or try another query

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

125841-126779 (frame -1) on NZ_CP011971.1 Steroidobacter denitrificans strain DSM 18526 chromosome, complete genome
is similar to:
PaperBLAST

YDIB_ECOLI / P0A6D5: Quinate/shikimate dehydrogenase; NAD-dependent shikimate 5-dehydrogenase; EC 1.1.1.282 from Escherichia coli
YdiB / b1692: quinate/shikimate dehydrogenase (EC 1.1.1.282) from Escherichia coli
ydiB / RF|NP_416207: quinate/shikimate dehydrogenase; EC 1.1.1.282 from Escherichia coli
ydiB / P0A6D5: quinate/shikimate dehydrogenase (EC 1.1.1.282) from Escherichia coli

28% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory