Curated BLAST for Genomes

 

Curated BLAST

Searching in Steroidobacter denitrificans DSM 18526 (GCF_001579945.1)

Found 31 curated entries in PaperBLAST's database that match '2.7.2.1' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Steroidobacter denitrificans DSM 18526, or try another query

ACG33_RS11040 ACG33_11035 WP_066921191.1: acetate/propionate family kinase
is similar to:
PaperBLAST

P9WQH1: acetate kinase (EC 2.7.2.1) from Mycobacterium tuberculosis

45% id,
99% cov

G4T0C7: acetate kinase (EC 2.7.2.1) from Methylotuvimicrobium alcaliphilum

44% id,
98% cov

ACKA_THEMA / Q9WYB1: Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima
ackA / PDB|2IIR_A: acetate kinase; EC 2.7.2.1 from Thermotoga maritima
Q9WYB1: acetate kinase (EC 2.7.2.1) from Thermotoga maritima

43% id,
99% cov

More...

ACG33_RS13610 ACG33_13610 WP_036196077.1: acetate/propionate family kinase
is similar to:
PaperBLAST

P9WQH1: acetate kinase (EC 2.7.2.1) from Mycobacterium tuberculosis

35% id,
98% cov

G4T0C7: acetate kinase (EC 2.7.2.1) from Methylotuvimicrobium alcaliphilum

34% id,
97% cov

E3W769: acetate kinase (EC 2.7.2.1) from Shewanella sp.

31% id,
99% cov

More...

ACG33_RS05955 ACG33_05965 WP_066919545.1: 5-(carboxyamino)imidazole ribonucleotide synthase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

26% id,
92% cov

ACG33_RS13490 ACG33_13490 WP_083536947.1: hypothetical protein
is similar to:
PaperBLAST

G4T0C7: acetate kinase (EC 2.7.2.1) from Methylotuvimicrobium alcaliphilum

28% id,
28% cov

ACKA_ECOLI / P0A6A3: Acetate kinase; Acetokinase; EC 2.7.2.1 from Escherichia coli
AckA / b2296: acetate kinase (EC 2.7.2.15; EC 2.7.2.1; EC 2.7.2.7; EC 2.7.2.14) from Escherichia coli
ackA / RF|NP_416799: acetate kinase; EC 2.7.2.1 from Escherichia coli
P0A6A5: acetate kinase (EC 2.7.2.1) from Escherichia coli
P0A6A3: acetate kinase (EC 2.7.2.1) from Escherichia coli

31% id,
26% cov

YhaA / b3115: propionate kinase (EC 2.7.2.7; EC 2.7.2.1; EC 2.7.2.15; EC 2.7.2.14) from Escherichia coli

32% id,
24% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1337126-1338649 (frame -2) on NZ_CP011971.1 Steroidobacter denitrificans strain DSM 18526 chromosome, complete genome
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
Also see hits to annotated proteins above

26% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory