Curated BLAST for Genomes

 

Curated BLAST

Searching in Steroidobacter denitrificans DSM 18526 (GCF_001579945.1)

Found 1 curated entries in PaperBLAST's database that match 'cystathionine-gamma-lyase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Steroidobacter denitrificans DSM 18526, or try another query

ACG33_RS02500 ACG33_02485 WP_083536376.1: PLP-dependent aspartate aminotransferase family protein
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

54% id,
89% cov

metB ACG33_RS08115 ACG33_08115 WP_066920229.1: cystathionine gamma-synthase
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

45% id,
90% cov

ACG33_RS14630 ACG33_14640 WP_066923539.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

44% id,
89% cov

ACG33_RS00985 ACG33_00980 WP_066917961.1: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

35% id,
48% cov

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

35% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

236146-237567 (frame -3) on NZ_CP011971.1 Steroidobacter denitrificans strain DSM 18526 chromosome, complete genome
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea
Also see hits to annotated proteins above

35% id,
52% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory