Curated BLAST for Genomes

 

Curated BLAST

Searching in Kocuria turfanensis HO-9042 (GCF_001580365.1)

Found 42 curated entries in PaperBLAST's database that match '1.4.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Kocuria turfanensis HO-9042, or try another query

AYX06_RS15495 WP_062736531.1: Glu/Leu/Phe/Val dehydrogenase
is similar to:
PaperBLAST

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

54% id,
98% cov

Q977U6: glutamate dehydrogenase (EC 1.4.1.2) from Haloferax mediterranei

49% id,
98% cov

DHE2_HALSI / P29051: NAD-specific glutamate dehydrogenase A; NAD-GDH A; EC 1.4.1.2 from Halobacterium salinarum
gdhA / GB|AAW19068.1: glutamate dehydrogenase; EC 1.4.1.2 from Halobacterium salinarum
P29051: glutamate dehydrogenase (EC 1.4.1.2) from Halobacterium salinarum

49% id,
97% cov

More...

gdhA AYX06_RS06345 WP_062735050.1: NADP-specific glutamate dehydrogenase
is similar to:
PaperBLAST

Q9TVN3: glutamate dehydrogenase (EC 1.4.1.2) from Entodinium caudatum

52% id,
99% cov

DHE2_CLOSY / P24295: NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Clostridium symbiosum
P24295: glutamate dehydrogenase (EC 1.4.1.2) from [Clostridium] symbiosum

53% id,
96% cov

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

33% id,
94% cov

More...

AYX06_RS13840 WP_084271636.1: NAD-glutamate dehydrogenase
is similar to:
PaperBLAST

Q8CJY0: glutamate dehydrogenase (EC 1.4.1.2) from Streptomyces coelicolor

45% id,
97% cov

AZOBR_RS00190: L-glutamate dehydrogenase (NAD+) (EC 1.4.1.2) from Azospirillum brasilense

42% id,
98% cov

DHE2_MYCTU / O53203: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Mycobacterium tuberculosis

41% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory