Curated BLAST for Genomes

 

Curated BLAST

Searching in Collimonas arenae Ter10 (GCF_001584165.1)

Found 23 curated entries in PaperBLAST's database that match '1.13.11.1' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Collimonas arenae Ter10, or try another query

pcaH CAter10_RS02690 CAter10_0607 WP_061532181.1: protocatechuate 3,4-dioxygenase subunit beta
is similar to:
PaperBLAST

HQD2_CANAL / P86029: Catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans
orf19.4567: catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans

31% id,
62% cov

HQDA_ASPNC / A2QAP8: Intradiol ring-cleavage dioxygenase hqdA; EC 1.13.11.1; EC 1.13.11.37 from Aspergillus niger

26% id,
63% cov

PS417_23660: Catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas simiae

33% id,
48% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory