Curated BLAST for Genomes

 

Curated BLAST

Searching in Collimonas arenae Ter10 (GCF_001584165.1)

Found 27 curated entries in PaperBLAST's database that match '1.13.11.52' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Collimonas arenae Ter10, or try another query

kynA CAter10_RS04900 CAter10_1129 WP_061532529.1: tryptophan 2,3-dioxygenase
is similar to:
PaperBLAST

Q8PDA8: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Xanthomonas campestris

49% id,
91% cov

P20351: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Drosophila melanogaster

34% id,
49% cov

P48775: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Homo sapiens

33% id,
44% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory