Curated BLAST for Genomes

 

Curated BLAST

Searching in Collimonas arenae Ter10 (GCF_001584165.1)

Found 8 curated entries in PaperBLAST's database that match '1.3.8.6' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Collimonas arenae Ter10, or try another query

CAter10_RS02405 CAter10_0542 WP_061532141.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

31% id,
94% cov

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

29% id,
94% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

28% id,
95% cov

More...

CAter10_RS15295 CAter10_3581 WP_061534082.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

31% id,
94% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

31% id,
94% cov

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

28% id,
95% cov

More...

CAter10_RS15480 CAter10_3624 WP_061534111.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

28% id,
84% cov

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

26% id,
84% cov

GCDH_MOUSE / Q60759: Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Mus musculus
Q60759: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Mus musculus

25% id,
75% cov

More...

CAter10_RS15605 CAter10_3653 WP_061534131.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

26% id,
84% cov

GCDH_MOUSE / Q60759: Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Mus musculus
Q60759: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Mus musculus

26% id,
53% cov

GCDH_PIG / P81140: Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Sus scrofa

29% id,
47% cov

More...

CAter10_RS02355 CAter10_0527 WP_061532135.1: acyl-CoA dehydrogenase C-terminal domain-containing protein
is similar to:
PaperBLAST

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

26% id,
69% cov

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

29% id,
58% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

26% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1790229-1791377 (frame -3) on NZ_CP013233.1 Collimonas arenae strain Ter10 chromosome, complete genome
is similar to:
PaperBLAST

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida
Also see hits to annotated proteins above

85% id,
92% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.
Also see hits to annotated proteins above

81% id,
92% cov

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei
Also see hits to annotated proteins above

79% id,
93% cov

More...

1791158-1791529 (frame -1) on NZ_CP013233.1 Collimonas arenae strain Ter10 chromosome, complete genome
is similar to:
PaperBLAST

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei
Also see hits to annotated proteins above

77% id,
8% cov

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida
Also see hits to annotated proteins above

73% id,
8% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.
Also see hits to annotated proteins above

54% id,
9% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory