Curated BLAST for Genomes

 

Curated BLAST

Searching in Collimonas arenae Ter10 (GCF_001584165.1)

Found 20 curated entries in PaperBLAST's database that match '2.7.1.165' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Collimonas arenae Ter10, or try another query

CAter10_RS01900 WP_061532066.1: glycerate kinase
is similar to:
PaperBLAST

YbbZ / b0514: glycerate 2-kinase 2 (EC 2.7.1.165) from Escherichia coli
glxK / P77364: glycerate 2-kinase 2 (EC 2.7.1.165) from Escherichia coli
P77364: glycerate 2-kinase (EC 2.7.1.165) from Escherichia coli

51% id,
99% cov

GLXK1_ECOLI / P23524: Glycerate 2-kinase; Glycerate kinase 1; GK1; EC 2.7.1.165 from Escherichia coli
YhaD / b3124: glycerate 2-kinase 1 (EC 2.7.1.165) from Escherichia coli
garK / P23524: glycerate 2-kinase 1 (EC 2.7.1.165) from Escherichia coli
P23524: glycerate 2-kinase (EC 2.7.1.165) from Escherichia coli

50% id,
99% cov

PS417_13970 / A0A1N7UI49: glycerate 2-kinase (EC 2.7.1.165) from Pseudomonas simiae

48% id,
99% cov

More...

CAter10_RS16330 CAter10_3823 WP_061534243.1: glycerate kinase
is similar to:
PaperBLAST

GCK_THEMA / Q9X1S1: D-glycerate 2-kinase; GCK; EC 2.7.1.165 from Thermotoga maritima
Q9X1S1: glycerate 2-kinase (EC 2.7.1.165) from Thermotoga maritima

39% id,
97% cov

GCK_PYRHO / O58231: Glycerate 2-kinase; GCK; 2-phosphoglycerate forming glycerate kinase; EC 2.7.1.165 from Pyrococcus horikoshii
O58231: glycerate 2-kinase (EC 2.7.1.165) from Pyrococcus horikoshii

40% id,
93% cov

Q703V9: glycerate 2-kinase (EC 2.7.1.165) from Thermoproteus tenax

34% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3560722-3562020 (frame -2) on NZ_CP013233.1 Collimonas arenae strain Ter10 chromosome, complete genome
is similar to:
PaperBLAST

GCK_THEMA / Q9X1S1: D-glycerate 2-kinase; GCK; EC 2.7.1.165 from Thermotoga maritima
Q9X1S1: glycerate 2-kinase (EC 2.7.1.165) from Thermotoga maritima
Also see hits to annotated proteins above

39% id,
100% cov

GCK_PICTO / Q6KZ25: Glycerate 2-kinase; GCK; 2-phosphoglycerate forming glycerate kinase; EC 2.7.1.165 from Picrophilus torridus
Also see hits to annotated proteins above

28% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory