Curated BLAST for Genomes

 

Curated BLAST

Searching in Collimonas arenae Ter10 (GCF_001584165.1)

Found 8 curated entries in PaperBLAST's database that match '4.1.1.77' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Collimonas arenae Ter10, or try another query

CAter10_RS03175 CAter10_0724 WP_061532252.1: fumarylacetoacetate hydrolase family protein
is similar to:
PaperBLAST

AMNE_PSESP / Q9KWS3: 4-oxalocrotonate decarboxylase; EC 4.1.1.77 from Pseudomonas sp.
amnE / Q9KWS3: 4-oxalocrotonate decarboxylase monomer (EC 4.1.1.77) from Pseudomonas sp.

27% id,
91% cov

CAter10_RS00770 CAter10_0171 WP_061531904.1: hypothetical protein
is similar to:
PaperBLAST

cnbF / Q38M37: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Comamonas testosteroni

22% id,
87% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory