Curated BLAST for Genomes

 

Curated BLAST

Searching in Collimonas pratensis Ter91 (GCF_001584185.1)

Found 11 curated entries in PaperBLAST's database that match '2.7.1.56' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Collimonas pratensis Ter91, or try another query

rbsK CPter91_RS23405 CPter91_5098 WP_061944912.1: ribokinase
is similar to:
PaperBLAST

K1PF_HALVD / D4GYE6: 1-phosphofructokinase; Fructose 1-phosphate kinase; Fru1PK; EC 2.7.1.56 from Haloferax volcanii
D4GYE6: 1-phosphofructokinase (EC 2.7.1.56) from Haloferax volcanii

32% id,
82% cov

CPter91_RS14175 CPter91_3075 WP_061941347.1: sugar kinase
is similar to:
PaperBLAST

Psest_3354: 1-phosphofructokinase (EC 2.7.1.56) from Pseudomonas stutzeri

27% id,
90% cov

CPter91_RS16280 CPter91_3525 WP_236905839.1: carbohydrate kinase
is similar to:
PaperBLAST

K1PF_VIBCH / Q9KM71: 1-phosphofructokinase; Fructose 1-phosphate kinase; Fru1PK; EC 2.7.1.56 from Vibrio cholerae

26% id,
88% cov

Psest_3354: 1-phosphofructokinase (EC 2.7.1.56) from Pseudomonas stutzeri

24% id,
84% cov

K1PF_ECOLI / P0AEW9: 1-phosphofructokinase; Fructose 1-phosphate kinase; Fru1PK; EC 2.7.1.56 from Escherichia coli
Fpk / b2168: 1-phosphofructokinase (EC 2.7.1.56) from Escherichia coli
fruK / P0AEW9: 1-phosphofructokinase (EC 2.7.1.56) from Escherichia coli

38% id,
33% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3627443-3628561 (frame +2) on NZ_CP013234.1 Collimonas pratensis strain Ter91 chromosome, complete genome
is similar to:
PaperBLAST

K1PF_VIBCH / Q9KM71: 1-phosphofructokinase; Fructose 1-phosphate kinase; Fru1PK; EC 2.7.1.56 from Vibrio cholerae
Also see hits to annotated proteins above

25% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory