Curated BLAST for Genomes

 

Curated BLAST

Searching in Collimonas pratensis Ter91 (GCF_001584185.1)

Found 11 curated entries in PaperBLAST's database that match '3.1.1.17' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Collimonas pratensis Ter91, or try another query

CPter91_RS04060 CPter91_0866 WP_061937245.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

RGN_XENLA / Q9I922: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; xSMP-30; EC 3.1.1.17 from Xenopus laevis

35% id,
95% cov

RGN_MOUSE / Q64374: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Mus musculus
Q64374: gluconolactonase (EC 3.1.1.17) from Mus musculus

33% id,
93% cov

A9CPS8: gluconolactonase (EC 3.1.1.17) from Euglena gracilis

32% id,
95% cov

More...

CPter91_RS22845 CPter91_4981 WP_061944649.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

A9CPS8: gluconolactonase (EC 3.1.1.17) from Euglena gracilis

32% id,
93% cov

RGN_XENLA / Q9I922: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; xSMP-30; EC 3.1.1.17 from Xenopus laevis

31% id,
95% cov

RGN_RAT / Q03336: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Rattus norvegicus
Rgn / Q03336: gluconolactonase (EC 3.1.1.17) from Rattus norvegicus

30% id,
95% cov

More...

CPter91_RS17160 CPter91_3715 WP_061942311.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

RGN_XENLA / Q9I922: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; xSMP-30; EC 3.1.1.17 from Xenopus laevis

30% id,
97% cov

RGN_MOUSE / Q64374: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Mus musculus
Q64374: gluconolactonase (EC 3.1.1.17) from Mus musculus

29% id,
97% cov

RGN_HUMAN / Q15493: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Homo sapiens
Q15493: gluconolactonase (EC 3.1.1.17) from Homo sapiens

30% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory