Curated BLAST for Genomes

 

Curated BLAST

Searching in Hydrogenophaga taeniospiralis CCUG 15921 NBRC 102512 (GCF_001592305.1)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.59' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Hydrogenophaga taeniospiralis CCUG 15921 NBRC 102512, or try another query

HTA01S_RS09515 WP_068169962.1: GMC family oxidoreductase N-terminal domain-containing protein
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

71% id,
94% cov

betA HTA01S_RS06370 WP_068167937.1: choline dehydrogenase
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

44% id,
95% cov

HTA01S_RS04880 WP_068167459.1: choline dehydrogenase
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

42% id,
93% cov

HTA01S_RS15265 WP_068173364.1: GMC family oxidoreductase N-terminal domain-containing protein
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

40% id,
94% cov

HTA01S_RS08210 WP_068169099.1: iron-containing alcohol dehydrogenase
is similar to:
PaperBLAST

pydE / A0A0A3J5T1: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59; EC 1.1.1.298) from Ureibacillus massiliensis

29% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

192152-193981 (frame -1) on NZ_BCWR01000004.1 Hydrogenophaga taeniospiralis CCUG 15921 strain NBRC 102512, whole genome shotgun sequence
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.
Also see hits to annotated proteins above

41% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory