Curated BLAST for Genomes

 

Curated BLAST

Searching in Hydrogenophaga taeniospiralis CCUG 15921 NBRC 102512 (GCF_001592305.1)

Found 23 curated entries in PaperBLAST's database that match '1.13.11.1' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Hydrogenophaga taeniospiralis CCUG 15921 NBRC 102512, or try another query

HTA01S_RS20720 WP_068175025.1: protocatechuate 3,4-dioxygenase
is similar to:
PaperBLAST

catA1: catechol 1,2-dioxygenase 1; EC 1.13.11.1 from Acinetobacter lwoffii

34% id,
58% cov

salD / Q0VH42: 4-methylcatechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei
Q0VH42: catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei

31% id,
62% cov

catA / A0F0B5: catechol-1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei
A0F0B5: catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei

30% id,
59% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory