Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanoculleus horonobensis JCM 15517 (GCF_001602375.1)

Found 76 curated entries in PaperBLAST's database that match '1.1.1.27' as complete word(s).

These curated entries have 63 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methanoculleus horonobensis JCM 15517, or try another query

MCUHO_RS09440 WP_067078821.1: malate dehydrogenase
is similar to:
PaperBLAST

B9MKZ8: L-lactate dehydrogenase (EC 1.1.1.27) from Caldicellulosiruptor bescii

37% id,
98% cov

LDH_THEMA / P16115: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermotoga maritima

37% id,
97% cov

E7CXT1: L-lactate dehydrogenase (EC 1.1.1.27) from Thermoanaerobacterium saccharolyticum

36% id,
100% cov

More...

MCUHO_RS06180 WP_067075290.1: lactate dehydrogenase
is similar to:
PaperBLAST

LDH1_STAAC / Q5HJD7: L-lactate dehydrogenase 1; L-LDH 1; EC 1.1.1.27 from Staphylococcus aureus
LDH1_STAAE / A6QDL6: L-lactate dehydrogenase 1; L-LDH 1; EC 1.1.1.27 from Staphylococcus aureus

34% id,
96% cov

Q5FMB0: L-lactate dehydrogenase (EC 1.1.1.27) from Lactobacillus acidophilus

33% id,
91% cov

Q8I8U4: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria tenella

31% id,
95% cov

More...

ercA MCUHO_RS02650 WP_067073049.1: alcohol dehydrogenase-like regulatory protein ErcA
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

33% id,
48% cov

fni MCUHO_RS00080 WP_067072071.1: type 2 isopentenyl-diphosphate Delta-isomerase
is similar to:
PaperBLAST

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

34% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory