Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanoculleus horonobensis JCM 15517 (GCF_001602375.1)

Found 17 curated entries in PaperBLAST's database that match '1.1.2.3' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Methanoculleus horonobensis JCM 15517, or try another query

tfrB MCUHO_RS10425 WP_067077968.1: fumarate reductase (CoM/CoB) subunit TfrB
is similar to:
PaperBLAST

lldE / Q8EGS4: L-lactate dehydrogenase LldE subunit (EC 1.1.2.3) from Shewanella oneidensis

25% id,
90% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

28% id,
31% cov

MCUHO_RS08050 WP_067076512.1: glutamate synthase-related protein
is similar to:
PaperBLAST

SM_b20850: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Sinorhizobium meliloti

32% id,
33% cov

CYB2_TALSN / B8MKR3: L-lactate dehydrogenase (cytochrome); EC 1.1.2.3 from Talaromyces stipitatus

25% id,
32% cov

lldD: L-lactate dehydrogenase [cytochrome]; EC 1.1.2.3 from Escherichia coli

31% id,
24% cov

More...

MCUHO_RS10935 WP_067078263.1: glutamate synthase-related protein
is similar to:
PaperBLAST

W1QKE8: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Ogataea angusta

21% id,
47% cov

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

35% id,
20% cov

SM_b20850: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Sinorhizobium meliloti

30% id,
22% cov

More...

fni MCUHO_RS00080 WP_067072071.1: type 2 isopentenyl-diphosphate Delta-isomerase
is similar to:
PaperBLAST

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

28% id,
34% cov

hdrB MCUHO_RS05365 WP_067074770.1: CoB--CoM heterodisulfide reductase subunit B
is similar to:
PaperBLAST

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

29% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory