Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudovibrio axinellae Ad2 (GCF_001623255.1)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.43' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudovibrio axinellae Ad2, or try another query

PsAD2_RS07650 PsAD2_01559 WP_068004624.1: D-glycerate dehydrogenase
is similar to:
PaperBLAST

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

39% id,
95% cov

kguD / Q5TM04: 2-dehydro-6-phosphogluconate reductase (EC 1.1.1.43) from Pseudomonas fluorescens

37% id,
98% cov

AO353_26885: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas fluorescens

37% id,
97% cov

More...

PsAD2_RS00110 PsAD2_00022 WP_068000321.1: glyoxylate/hydroxypyruvate reductase A
is similar to:
PaperBLAST

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

30% id,
83% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory