Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudovibrio axinellae Ad2 (GCF_001623255.1)

Found 9 curated entries in PaperBLAST's database that match '2.7.1.7' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudovibrio axinellae Ad2, or try another query

PsAD2_RS05040 PsAD2_01025 WP_068003245.1: ROK family protein
is similar to:
PaperBLAST

SMc03109: Mannokinase (EC 2.7.1.7) from Sinorhizobium meliloti

55% id,
99% cov

Mak / b0394: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli
mak / P23917: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli

53% id,
99% cov

PsAD2_RS21780 PsAD2_04363 WP_068010615.1: ROK family protein
is similar to:
PaperBLAST

SMc03109: Mannokinase (EC 2.7.1.7) from Sinorhizobium meliloti

38% id,
97% cov

Mak / b0394: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli
mak / P23917: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli

36% id,
97% cov

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

31% id,
96% cov

PsAD2_RS05310 PsAD2_01079 WP_068003429.1: ROK family protein
is similar to:
PaperBLAST

SMc03109: Mannokinase (EC 2.7.1.7) from Sinorhizobium meliloti

27% id,
73% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

6912-8072 (frame -2) on NZ_LMCB01000022.1 Pseudovibrio axinellae strain Ad2 AD2_contig000022, whole genome shotgun sequence
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis
Also see hits to annotated proteins above

29% id,
53% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory