Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudovibrio axinellae Ad2 (GCF_001623255.1)

Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudovibrio axinellae Ad2, or try another query

PsAD2_RS08020 PsAD2_01636 WP_068004729.1: DNA translocase FtsK
is similar to:
PaperBLAST

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

26% id,
36% cov

PsAD2_RS18590 PsAD2_03746 WP_082825702.1: MFS transporter
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

21% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory