Curated BLAST for Genomes

 

Curated BLAST

Searching in Brevundimonas sp. GW460-12-10-14-LB2 (GCF_001636925.1)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Brevundimonas sp. GW460-12-10-14-LB2, or try another query

thrC A4249_RS00020 A4249_00020 WP_231868734.1: threonine synthase
is similar to:
PaperBLAST

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

44% id,
99% cov

Q2SWH9: threonine synthase (EC 4.2.3.1) from Burkholderia thailandensis

38% id,
100% cov

N515DRAFT_0575: threonine synthase (EC 4.2.3.1) from Dyella japonica

38% id,
96% cov

More...

A4249_RS11385 A4249_11390 WP_066552728.1: threonine ammonia-lyase
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

29% id,
46% cov

A4249_RS09655 A4249_09660 WP_066552262.1: cysteine synthase A
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

35% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory