Curated BLAST for Genomes

 

Curated BLAST

Searching in Nocardioides dokdonensis FR1436 (GCF_001653335.1)

Found 12 curated entries in PaperBLAST's database that match '2.7.1.178' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Nocardioides dokdonensis FR1436, or try another query

I601_RS02645 I601_0537 WP_237089534.1: PfkB family carbohydrate kinase
is similar to:
PaperBLAST

kdgK / P45416: 2-dehydro-3-deoxy-D-gluconate kinase (EC 2.7.1.178) from Dickeya dadantii

40% id,
31% cov

YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178; EC 2.7.1.45) from Escherichia coli
kdgK / P37647: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178) from Escherichia coli

36% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory