Curated BLAST for Genomes

 

Curated BLAST

Searching in Nocardioides dokdonensis FR1436 (GCF_001653335.1)

Found 18 curated entries in PaperBLAST's database that match '2.7.1.45' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Nocardioides dokdonensis FR1436, or try another query

I601_RS02165 I601_0441 WP_068105853.1: carbohydrate kinase
is similar to:
PaperBLAST

KDGK_THET8 / Q53W83: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Thermus thermophilus

33% id,
95% cov

Q0K080: dehydrogluconokinase (EC 2.7.1.13); 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Cupriavidus necator

30% id,
98% cov

I601_RS02645 I601_0537 WP_237089534.1: PfkB family carbohydrate kinase
is similar to:
PaperBLAST

KDGK_THET8 / Q53W83: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Thermus thermophilus

29% id,
85% cov

KDGK_DICD3 / P45416: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Dickeya dadantii

40% id,
31% cov

KDGK_ECOLI / P37647: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Escherichia coli
YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178; EC 2.7.1.45) from Escherichia coli

36% id,
32% cov

More...

I601_RS09700 I601_1968 WP_068108802.1: bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase
is similar to:
PaperBLAST

RR42_RS28860: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Cupriavidus basilensis

44% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory