Curated BLAST for Genomes

 

Curated BLAST

Searching in Nocardioides dokdonensis FR1436 (GCF_001653335.1)

Found 7 curated entries in PaperBLAST's database that match '4.1.2.5' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Nocardioides dokdonensis FR1436, or try another query

I601_RS13330 I601_2698 WP_068110556.1: GntG family PLP-dependent aldolase
is similar to:
PaperBLAST

Q9X266: L-threonine aldolase (EC 4.1.2.5) from Thermotoga maritima

47% id,
99% cov

LtaA / b0870: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli
itaE / GB|BAA20882.1: threonine aldolase; EC 4.1.2.5 from Escherichia coli

43% id,
98% cov

GLY1 / GB|AAA72430.1: threonine aldolase; EC 4.1.2.5 from Saccharomyces cerevisiae

35% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory