Curated BLAST for Genomes

 

Curated BLAST

Searching in Hafnia paralvei ATCC 29927 (GCF_001655005.1)

Found 37 curated entries in PaperBLAST's database that match '3.5.99.6' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Hafnia paralvei ATCC 29927, or try another query

nagB M988_RS14170 M988_2856 WP_064574639.1: glucosamine-6-phosphate deaminase
is similar to:
PaperBLAST

NAGB_ECO57 / P0A760: Glucosamine-6-phosphate deaminase; GlcN6P deaminase; GNPDA; Glucosamine-6-phosphate isomerase; EC 3.5.99.6 from Escherichia coli
NAGB_ECOLI / P0A759: Glucosamine-6-phosphate deaminase; GlcN6P deaminase; GNPDA; Glucosamine-6-phosphate isomerase; EC 3.5.99.6 from Escherichia coli
GlmD / b0678: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Escherichia coli
nagB / PDB|1CD5: GlcN6P deaminase; EC 3.5.99.6 from Escherichia coli
nagB / P0A759: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Escherichia coli

82% id,
100% cov

U5LXR4: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Gallus gallus

63% id,
92% cov

E1C878: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Gallus gallus

61% id,
94% cov

More...

M988_RS15870 M988_3196 WP_008812474.1: SIS domain-containing protein
is similar to:
PaperBLAST

AGAS_SHESA / A0KYQ7: D-galactosamine-6-phosphate deaminase AgaS; GalN-6-P deaminase; Glucosamine-6-phosphate deaminase; GlcN-6-P deaminase; EC 3.5.99.-; EC 3.5.99.6 from Shewanella sp.

43% id,
95% cov

M988_RS19180 M988_3871 WP_064575374.1: SIS domain-containing protein
is similar to:
PaperBLAST

AGAS_SHESA / A0KYQ7: D-galactosamine-6-phosphate deaminase AgaS; GalN-6-P deaminase; Glucosamine-6-phosphate deaminase; GlcN-6-P deaminase; EC 3.5.99.-; EC 3.5.99.6 from Shewanella sp.

33% id,
96% cov

glmS M988_RS20750 M988_4183 WP_008815709.1: glutamine--fructose-6-phosphate transaminase (isomerizing)
is similar to:
PaperBLAST

PGA1_c27890: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Phaeobacter inhibens

30% id,
97% cov

SO3506: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella oneidensis

29% id,
98% cov

Shewana3_3113: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella sp.

29% id,
98% cov

More...

murQ M988_RS06225 M988_1253 WP_064573321.1: N-acetylmuramic acid 6-phosphate etherase
is similar to:
PaperBLAST

BPHYT_RS02735: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Burkholderia phytofirmans

24% id,
46% cov

CCNA_00453: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Caulobacter crescentus

22% id,
43% cov

Ga0059261_1644: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Sphingomonas koreensis

22% id,
41% cov

More...

M988_RS02865 M988_0578 WP_008815203.1: MurR/RpiR family transcriptional regulator
is similar to:
PaperBLAST

SO3506: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella oneidensis

30% id,
32% cov

Shewana3_3113: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella sp.

30% id,
32% cov

BPHYT_RS02735: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Burkholderia phytofirmans

34% id,
27% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory