Curated BLAST for Genomes

 

Curated BLAST

Searching in Hafnia paralvei ATCC 29927 (GCF_001655005.1)

Found 12 curated entries in PaperBLAST's database that match '4.3.1.1' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Hafnia paralvei ATCC 29927, or try another query

aspA M988_RS18285 M988_3687 WP_008814805.1: aspartate ammonia-lyase
is similar to:
PaperBLAST

ASPA_ECOLI / P0AC38: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Escherichia coli
AspA / b4139: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
aspA / P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli

92% id,
100% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

56% id,
99% cov

ASPA_PSEAE / Q9HTD7: Aspartate ammonia-lyase; Aspartase; PA-AspA; EC 4.3.1.1 from Pseudomonas aeruginosa
Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

58% id,
97% cov

More...

fumC M988_RS09465 M988_1900 WP_008813534.1: class II fumarate hydratase
is similar to:
PaperBLAST

ASPA_PSECO / P0DXC8: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Pseudomonas canavaninivorans

41% id,
98% cov

ASPA_BACSP / Q9LCC6: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Bacillus sp.
Q9LCC6: aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp.

41% id,
98% cov

ASPA_PSEFL / P07346: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Pseudomonas fluorescens

41% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory