Curated BLAST for Genomes

 

Curated BLAST

Searching in Erythrobacter dokdonensis DSW-74 (GCF_001677335.1)

Found 31 curated entries in PaperBLAST's database that match '1.1.1.28' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Erythrobacter dokdonensis DSW-74, or try another query

I603_RS03095 I603_0630 WP_068862314.1: D-glycerate dehydrogenase
is similar to:		 PaperBLAST

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

 36% id,
100% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

 38% id,
88% cov

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

 33% id,
92% cov

More...

I603_RS05495 I603_1118 WP_086621990.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

 33% id,
99% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

 31% id,
86% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

 28% id,
68% cov

serA I603_RS04065 I603_0830 WP_068863251.1: phosphoglycerate dehydrogenase
is similar to:		 PaperBLAST

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

 32% id,
94% cov

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

 33% id,
90% cov

Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum

 29% id,
99% cov

More...

I603_RS01040 I603_0212 WP_068861970.1: D-2-hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

 28% id,
99% cov

O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum

 31% id,
79% cov

Q1GAA2: D-lactate dehydrogenase (EC 1.1.1.28); D-2-hydroxyacid dehydrogenase (NAD+) (EC 1.1.1.345) from Lactobacillus delbrueckii

 25% id,
89% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory