Curated BLAST for Genomes

 

Curated BLAST

Searching in Chryseobacterium arthrosphaerae CC-VM-7 (GCF_001684965.1)

Found 9 curated entries in PaperBLAST's database that match '1.2.1.18' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Chryseobacterium arthrosphaerae CC-VM-7, or try another query

BBI00_RS10955 BBI00_10945 WP_065398804.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis

34% id,
98% cov

dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp.

30% id,
92% cov

PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae

31% id,
89% cov

More...

BBI00_RS04765 BBI00_04760 WP_065397694.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis

29% id,
98% cov

dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp.

28% id,
95% cov

SMc00781: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Sinorhizobium meliloti

27% id,
98% cov

More...

BBI00_RS14510 BBI00_14500 WP_065399423.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis

27% id,
88% cov

PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae

26% id,
86% cov

AO356_23175: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

26% id,
83% cov

More...

pruA BBI00_RS10165 BBI00_10155 WP_065398658.1: L-glutamate gamma-semialdehyde dehydrogenase
is similar to:
PaperBLAST

ALD6 / A0A1D8PM94: malonate semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.18) from Candida albicans

26% id,
91% cov

Q9EQ20: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Mus musculus

25% id,
94% cov

AO356_23175: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

26% id,
88% cov

More...

BBI00_RS06965 BBI00_06955 WP_065398085.1: aldehyde dehydrogenase
is similar to:
PaperBLAST

mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis

26% id,
90% cov

Pf6N2E2_515: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

24% id,
90% cov

AO356_23175: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

24% id,
90% cov

More...

BBI00_RS09435 BBI00_09425 WP_065398526.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis

25% id,
92% cov

dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp.

23% id,
84% cov

PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae

25% id,
70% cov

More...

BBI00_RS08380 BBI00_08370 WP_065399672.1: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
is similar to:
PaperBLAST

ALD6 / A0A1D8PM94: malonate semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.18) from Candida albicans

27% id,
85% cov

dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp.

25% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1820667-1822463 (frame -2) on NZ_MAYG01000001.1 Chryseobacterium arthrosphaerae strain CC-VM-7 scaffold_1, whole genome shotgun sequence
is similar to:
PaperBLAST

ALD6 / A0A1D8PM94: malonate semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.18) from Candida albicans
Also see hits to annotated proteins above

26% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory