Curated BLAST for Genomes

 

Curated BLAST

Searching in Cloacibacillus porcorum CL-84 (T) (GCF_001701045.1)

Found 3 curated entries in PaperBLAST's database that match '2-deoxy-D-ribonate 3-dehydrogenase' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Cloacibacillus porcorum CL-84 (T), or try another query

BED41_RS15695 BED41_15695 WP_066748501.1: SDR family oxidoreductase
is similar to:
PaperBLAST

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

44% id,
95% cov

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

44% id,
95% cov

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

42% id,
97% cov

BED41_RS00875 BED41_00875 WP_066741880.1: glucose 1-dehydrogenase
is similar to:
PaperBLAST

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

35% id,
96% cov

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

30% id,
96% cov

BED41_RS10750 BED41_10750 WP_066745913.1: SDR family oxidoreductase
is similar to:
PaperBLAST

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

35% id,
94% cov

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

33% id,
97% cov

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

33% id,
94% cov

fabG BED41_RS06185 BED41_06185 WP_066744124.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

31% id,
94% cov

BED41_RS09415 BED41_09415 WP_066745242.1: SDR family oxidoreductase
is similar to:
PaperBLAST

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

30% id,
94% cov

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

29% id,
94% cov

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

28% id,
94% cov

BED41_RS01565 BED41_01565 WP_066742202.1: glucose 1-dehydrogenase
is similar to:
PaperBLAST

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

30% id,
94% cov

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

29% id,
94% cov

BED41_RS04325 BED41_04325 WP_066743455.1: SDR family oxidoreductase
is similar to:
PaperBLAST

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

29% id,
94% cov

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

29% id,
94% cov

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

26% id,
94% cov

BED41_RS10770 BED41_10770 WP_066745921.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

27% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

954702-955469 (frame +3) on NZ_CP016757.1 Cloacibacillus porcorum strain CL-84 (T) chromosome, complete genome
is similar to:
PaperBLAST

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans
Also see hits to annotated proteins above

29% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory