Curated BLAST for Genomes

 

Curated BLAST

Searching in Enterococcus termitis LMG 8895 (GCF_001730305.1)

Found 21 curated entries in PaperBLAST's database that match '1.17.1.8' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Enterococcus termitis LMG 8895, or try another query

dapB BCR25_RS19050 BCR25_13165 WP_069665198.1: 4-hydroxy-tetrahydrodipicolinate reductase
is similar to:
PaperBLAST

dapB / P42976: dihydrodipicolinate reductase subunit (EC 1.17.1.8) from Bacillus subtilis

55% id,
98% cov

DAPB_MYCTU / P9WP23: 4-hydroxy-tetrahydrodipicolinate reductase; HTPA reductase; EC 1.17.1.8 from Mycobacterium tuberculosis
dapB / P9WP23: dihydropicolinate reductase subunit (EC 1.17.1.8) from Mycobacterium tuberculosis
P9WP23: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Mycobacterium tuberculosis

44% id,
99% cov

dapB / P40110: dihydropicolinate reductase subunit (EC 1.17.1.8) from Corynebacterium glutamicum
P40110: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Corynebacterium glutamicum

43% id,
98% cov

More...

dapA BCR25_RS02300 BCR25_02300 WP_069661976.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

45% id,
97% cov

dapA BCR25_RS18335 BCR25_12450 WP_069665060.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

30% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory